Publications

97 entries « 1 of 2 »

2017

Naughton, Perry; Roux, Philippe; Schurgers, Curt; Kastner, Ryan; Jaffe, Jules S; Roberts, Paul L D

Self-localization of a deforming swarm of underwater vehicles using impulsive sound sources of opportunity Journal Article Forthcoming

IEEE Access, Forthcoming.

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Orenstein, Eric C; Beijbom, Oscar

Transfer learning and deep feature extraction for planktonic image data sets Inproceedings

Winter Conference on Applications of Computer Vision, pp. 1082-1088, IEEE 2017.

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Jaffe, Jules S; Franks, Peter J S; Roberts, Paul L D; Mirza, Diba; Schurgers, Curt; Kastner, Ryan; Boch, Adrien

A swarm of autonomous miniature underwater robot drifters for exploring submesoscale ocean dynamics Journal Article

Nature Communications, 8 (14189), 2017, (Article).

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2016

Naughton, Perry; Roux, Philippe; Yeakle, Riley; Schurgers, Curt; Kastner, Ryan; Jaffe, Jules S; Roberts, Paul L D

Ambient noise correlations on a mobile, deformable array Journal Article

The Journal of the Acoustical Society of America, 140 (6), pp. 4260-4270, 2016.

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Liao, Ran; Roberts, Paul L D; Jaffe, Jules S

Sizing submicron particles from optical scattering data collected with oblique incidence illumination Journal Article

Appl. Opt., 55 (33), pp. 9440–9449, 2016.

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Mullen, Andrew D; Treibitz, Tali; Roberts, Paul L D; Kelly, Emily L A; Horwitz, Rael; Smith, Jennifer E; Jaffe, Jules S

Underwater microscopy for in situ studies of benthic ecosystems Journal Article

Nat Commun, 7 , 2016.

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Orenstein, Eric C; Haag, Justin M; Gagnon, Yakir L; Jaffe, Jules S

Automated classification of camouflaging cuttlefish Journal Article

Methods in Oceanography, pp. -, 2016, ISSN: 2211-1220.

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Jaffe, Jules S

To sea and to see: That is the answer Journal Article

Methods in Oceanography, pp. -, 2016, ISSN: 2211-1220.

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2015

Jaffe, J S

Underwater Optical Imaging: The Past, the Present, and the Prospects Journal Article

Oceanic Engineering, IEEE Journal of, 40 (3), pp. 683-700, 2015, ISSN: 0364-9059.

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Treibitz, Tali ; Neal, Benjamin P; Kline, David I; Beijbom, Oscar ; Roberts, Paul L D; Mitchell, Greg B; Kriegman, David

Wide Field-of-View Fluorescence Imaging of Coral Reefs Journal Article

Scientific Reports, 5 , pp. 7694 EP -, 2015, (Article).

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Briseño-Avena, Christian; Roberts, Paul L D; Franks, Peter J S; Jaffe, Jules S

ZOOPS- O2: A broadband echosounder with coordinated stereo optical imaging for observing plankton in situ Journal Article

Methods in Oceanography, 12 , pp. 36 - 54, 2015, ISSN: 2211-1220.

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Pepper, Rachel E; Jaffe, Jules S; Variano, Evan; Koehl, MAR

Zooplankton in flowing water near benthic communities encounter rapidly fluctuating velocity gradients and accelerations Journal Article

Marine Biology, 162 (10), pp. 1939–1954, 2015.

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A., Darcy A; Yakir, Gagnon; R., Wheeler Benjamin; Sönke, Johnsen; Taniguchi, Jaffe Jules S

Cuttlefish Sepia officinalis Preferentially Respond to Bottom Rather than Side Stimuli When Not Allowed Adjacent to Tank Walls Journal Article

PLoS ONE, 10 (10), pp. 1-18, 2015.

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2014

Haag, Justin M; Roberts, Paul L D; Papen, George C; Jaffe, Jules S; Li, Linhai; Stramski, Dariusz

Deep-sea low-light radiometer system Journal Article

Opt. Express, 22 (24), pp. 30074–30091, 2014.

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Yi, Jinwang; Mirza, Diba; Kastner, Ryan; Schurgers, Curt; Roberts, Paul; Jaffe, Jules

ToA-TS: Time of arrival based joint time synchronization and tracking for mobile underwater systems Journal Article

Ad Hoc Networks, 34 (2015), pp. 211 - 223, 2014.

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2013

Haag, Justin M; Jaffe, Jules S; Sweeney, Alison M

Measurement system for marine animal reflectance functions Journal Article

Optics Express, 21 , pp. 3603-3616, 2013.

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Jaffe, J S; Franks, P J S; Briseno, C; Roberts, P L D; Laxton, B

Advances in underwater fluorometry, from bulk fluorescence to planar laser imaging of individuals Book Chapter

Subsea Optics and Imaging, Woodhead Publishing Limited, Cambridge, Woodhead Publishing Limited, Cambridge, 2013.

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Berdalet, E; McManus, M A; Ross, O N; Burchard, H; Chavez, F P; Jaffe, J S; Jenkinson, I R; Kudela, R; Lips, I; Lips, U; Lucas, A; Rivas, D; la Torre, Ruiz-de M C; Ryan, J; Sullivan, J M; Yamazaki, H

Understanding harmful algae in stratified systems: Review of progress and future directions Journal Article

Deep Sea Research Part II: Topical Studies in Oceanography, 101 , pp. 4-20, 2013, ISSN: 0967-0645.

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2012

Haag, Justin M; Sweeney, Alison M; Jaffe, Jules S

Measurement of Marine Animal Reflectance Functions Proceeding

Glasgow, Scotland, UK, 2012.

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Haag, Justin M; Sweeney, Alison M; Jaffe, Jules S

Measurement System for Obtaining Marine Animal Reflectance Functions Proceeding

Glasgow, Scotland, UK, 2012.

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2011

Roberts, Paul L D; Steinbuck, J V; Jaffe, Jules S; Horner-Devine, A R; Franks, Peter J S; Simonet, F

Estimation of In Situ, Three-Dimensional Particle Distributions from a Stereo Laser Imaging Profiler Journal Article

IEEE Journal of Oceanic Engineering, 36 , pp. 586 - 601, 2011.

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Jaffe, Jules S; Roberts, Paul L D

Applying diffraction theory to measure acoustically the in-situ orientation of marine animals Journal Article

Acoustics Today, 7 (3), pp. 36-37, 2011.

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Jaffe, Jules S; Roberts, Paul L D

Estimating fish orientation from broadband, limited-angle, multi-view, acoustic reflections Journal Article

Journal of the Acoustical Society of America, pp. 670-680, 2011.

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Roberts, Paul L D; Jaffe, Jules S; Trivedi, M M

Multiview, Broadband Acoustic Classification of Marine Fish: A Machine Learning Framework and Comparative Analysis Journal Article

IEEE Journal of Oceanic Engineering, 36 , pp. 90-104, 2011.

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Prairie, Jennifer C; Franks, Peter J S; Jaffe, Jules S; Doubell, Mark J; Yamazaki, Hidekatsu

Physical and biological controls of vertical gradients in phytoplankton Journal Article

Limnology and Oceanography, 2011.

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Jaffe, Jules S; Roberts, Paul L D

Acoustic reflections on marine populations Journal Article

Physics Today, 64 , pp. 76, 2011.

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2010

Prairie, Jennifer C; Franks, Peter J S; Jaffe, Jules S

Cryptic peaks: Invisible vertical structure in fluorescent particles revealed using a planar laser imaginer fluorometer Journal Article

Limnology and Oceanography, 55(5) , 2010.

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Steinbuck, J V; Roberts, Paul L D; Troy, C D; Horner-Devine, A R; Simonet, F; Uhlman, A; Jaffe, Jules S; Franks, Peter J S; Monismith, S G

An autonomous open-ocean stereoscopic PIV profiler Journal Article

Journal of Atmospheric and Oceanic Technology, 27 , 2010.

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Jaffe, Jules S

Enhanced extended range underwater imaging via structured illumination Journal Article

Optics Express, 18 , 2010.

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Li, Wei; Jaffe, Jules S

Sizing homogeneous spherical particles from intensity-only angular scatter Journal Article

Journal of the Optical Society of America, 2010.

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2009

Roberts, Paul L D

Multi-view, broadband, acoustic classification of marine animals PhD Thesis

University of California, San Diego, 2009, ISBN: 9781109125634.

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Roberts, Paul L D; Jaffe, Jules S

Multi-view sizing and classification of individual fish Proceeding

Monterey, CA, 2009.

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Karak"oyl"u, Erdem M; Franks, Peter J S; Tanaka, Yuji ; Roberts, Paul L D; Jaffe, Jules S

Copepod feeding quantified by planar laser imaging of gut fluorescence Journal Article

Limnology and Oceanography: Methods, 7 , pp. 33-41, 2009.

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Roberts, Paul L D; Jaffe, Jules S; Trivedi, M M

A Multiview, Multimodal Fusion Framework for Classifying Small Marine Animals with an Opto-Acoustic Imaging System Proceeding

Snowbird, Utah, 2009.

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2008

Roberts, Paul L D; Jaffe, Jules S

Classification of live, untethered zooplankton from observations of multiple-angle scatter Journal Article

Journal of the Acoustical Society of America, 124 , pp. 796-802, 2008.

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Roberts, Paul L D; Jaffe, Jules S

Application of multiple-angle acoustic scatter to remote fish classification Conference

Acoustics 08, Paris, France, 2008.

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Roberts, Paul L D; Jaffe, Jules S

Remote classification of fish species using multi-view acoustic scatter Conference

SEAFACTS, Bergen, Norway, 2008.

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Franks, Peter J S; Jaffe, Jules S

Microscale variability in the distributions of large fluorescent particles observed in situ with a planar laser imaging fluorometer Journal Article

Journal of Marine Systems, 69 (3-4), pp. 254 - 270, 2008, ISSN: 0924-7963, (Physical-Biological Interactions in the Upper Ocean).

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2007

Roberts, Paul L D; Jaffe, Jules S

Classifying pelagic animals with multi-view scattered sound Conference

American Fisheries Society, San Francisco, CA, 2007.

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Roberts, Paul L D; Jaffe, Jules S

A new multiple angle scattering apparatus for fish and zooplankton studies Conference

153nd Meeting of the Acoustical Society of America, Salt Lake City, Utah, 2007.

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A multi-angle acoustic scattering apparatus for zooplankton and fish: Instrument design and preliminary data Journal Article

2007.

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Jaffe, Jules S; Simonet, Fernando ; Roberts, Paul L D; Bowles, Ann E

Measurement of the acoustic reflectivity of sirenia (Florida manatees) at 171 kHz Journal Article

Journal of the Acoustical Society of America, 121 (1), pp. 158-165, 2007.

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Roberts, Paul L D; Jaffe, Jules S

Multiple angle acoustic classification of zooplankton Journal Article

Journal of the Acoustical Society of America, 121 , pp. 2060-2070, 2007.

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Jaffe, Jules S

A tomographic approach to inverse mie particle characterization from scattered light Journal Article

Optics Express, 15 (19), pp. 12217–12229, 2007.

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2006

Roberts, Paul L D; Jaffe, Jules S

Multiple-angle acoustic scattering and classification of zooplankton Conference

152nd Meeting of the Acoustical Society of America (Best Student Paper Award), Honolulu, Hawaii, 2006.

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Roberts, Paul L D; Steinbuck, J V; Simonet, Fernando ; Uhlman, A; Troy, C D; Horner-Devine, A R; Jaffe, Jules S; Franks, Peter J S; Monismith, S G

Development of a Pelagic Multi-spectral, 3-dimensional, Particle Image Velocimetry System: FIDO PHI PI Conference

Ocean Optics XVIII, Montreal, Quebec, 2006.

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Multistatic acoustic classification of zooplankton Journal Article

2006.

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Shao, B; Jaffe, Jules S; Chachisvilis, M; Esener, S C

Angular resolved light scattering for discriminating among marine picoplankton: modeling and experimental measurements Journal Article

Optics Express, 14 , pp. 12473-12484, 2006.

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Jaffe, Jules S

Using multiple-angle scattered sound to size fish swimbladders Journal Article

ICES Journal of Marine Science, 65 (6), pp. 1092-, 2006.

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2005

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Choosing Frequencies for Multifrequency Animal Abundance Estimation Journal Article

2005.

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97 entries « 1 of 2 »