 |
|||
 |
|||
 |
|||
 |
|||
 |
|||
 |
|||
Jaffe J.S., Simonet F., Roberts P.L.D., Bowles A.E."Measurement of the acoustic reflectivity of sirenia (Florida manatees) at 171 kHz", [Article] Journal Of The Acoustical Society Of America, 121 (1): 158-165, 2007 Jan.
Shao B., Jaffe J.S., Chachisvilis M., Esener S.C. "Angular resolved light scattering for
discriminating among marine picoplankton: modeling and experimental measurements", [Article] Optics Express, 14 (25): 12473-12484, 2006 Dec.
Roberts, P. L. D. and Jaffe, J. S. "Multiple angle acoustic classification of zooplankton", Accepted to J. Acoust. Soc. Am.
Jaffe, J. S. "Using multi-angle scattered sound to size fish swimbladders, ICES Journal of Marine Science 63 (8) 1397-1404 SEP 2006
Jaffe, J. S. "Sensing Plankton: Acoustics and Optical Imaging", (book chapter), European Workshop on Harmful Algal Blooms, (to appear) 2005.
Genin, A., J. S. Jaffe, R. Reef, C. Richter and P. J. S. Franks, "Swimming Against the Flow: a Mechanism of Zooplankton Aggregation", Science 308: 860-862, 2005 May 6.
Jaffe, J. S., "Three Dimensional Probability Density Functions via Tomographic Inversion". [Article] SIAM Journal of Applied Math, 65 (5) : 1506-1525, 2005 May.
Ai YH, Jaffe JS. "Design and preliminary tests of a family of adaptive waveforms to measure blood vessel diameter and wall thickness". IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL 52 (2): 250-260 FEB 2005.
Jaffe, J. S., " Performance bounds on synchronous laser line scan systems". [Article] Optics Express, 13 (3): 738-748, 2005.
Schell C, Jaffe JS. "Experimental verification of an interpolation algorithm for improved estimates of animal position" [Article] Journal Of The Acoustical Society Of America. 116 (1): 254-261, 2004 Jul.
De Robertis A. Schell C. Jaffe JS. "Acoustic observations of the swimming behavior of the euphausiid Euphausia pacifica Hansen". [Article] ICES Journal of Marine Science. 60(4):885-898, 2003 Aug.
Zawada DG. Jaffe JS. "Changes in the fluorescence of the Caribbean coral Montastraea faveolata during heat-induced bleaching". [Article] Limnology & Oceanography. 48(1 Part 2):412-425, 2003 Jan.
Fuchs E. Zimmerman RC. Jaffe JS. "The effect of elevated levels of phaeophytin in natural water on variable fluorescence measured from phytoplankton". [Article] Journal of Plankton Research. 24(11):1221-1229, 2002 Nov.
Moore, K.D. and Jaffe, J.S., "Time-evolution of high-resolution topographic measurements of the sea floor using a 3-D laser line scan mapping system", Oceanic Engineering, IEEE Journal of , Volume: 27 Issue: 3 , July 2002, Page(s): 525 -545
Fuchs E. Jaffe JS. Long RA. Azam F. "Thin laser light sheet microscope for microbial oceanography". [Article] Optics Express. 10(2):145-154, 2002 Jan 28
Franks PJS. Jaffe JS. "Microscale distributions of phytoplankton: initial results from a two-dimensional imaging fluorometer, OSST". [Article] Marine Ecology-Progress Series. 220:59-72, 2001.
Jaffe, J.S., K. D. Moore, J. McLean and M.P. Strand, "Underwater Optical Imaging: Status and Prospects,". Oceanography, Vol. 14, No.3 pgs. 66-76 (2001)
Richardson, M.D., Briggs, K.B., Bibee, L.D., Jumars, P.A., Sawyer, W.B., Albert, D.B., Bennett, R.H., Berger, T.K., Buckingham, M.J., Chotiros, N.P., Dahl, P.H., Dewitt, N.T., Fleischer, P., Flood, R., Greenlaw, C.F., Holliday, D.V., Hulbert, M.H., Hutnak, "Overview of SAX99: environmental considerations". [Article] IEEE Journal of Oceanic Engineering. 26(1):26-53, 2001 Jan.
De Robertis A. Jaffe JS. Ohman MD. "Size-dependent visual predation risk and the timing of vertical migration in zooplankton". [Article] Limnology & Oceanography. 45(8):1838-1844, 2000 Dec.
Moore KD. Jaffe JS. Ochoa BL. "Development of a new underwater bathymetric laser imaging system: L-bath". [Article] Journal of Atmospheric & Oceanic Technology. 17(8):1106-1117, 2000 Aug.
Jaffe JS. Ohman MD. De Robertis A. "Sonar estimates of daytime activity levels of Euphausia pacifica in Saanich Inlet". [Article] Canadian Journal of Fisheries & Aquatic Sciences. 56(11):2000-2010, 1999 Nov.
Jaffe JS. "Target localization for a three-dimensional multibeam sonar imaging system". [Article] Journal of the Acoustical Society of America. 105(6):3168-3175, 1999 Jun.
Jaffe JS. Ohman MD. De Robertis A. "OASIS in the sea: measurement of the acoustic reflectivity of zooplankton with concurrent optical imaging". [Article] Deep-Sea Research Part II-Topical Studies in Oceanography. 45(7):1239-+, 1998.
Jaffe JS, Moore KD, Zawada D, et al. "Underwater optical imaging: New hardware & software". [Article] Sea Technology 39 (7): 70-74, 1998 July.
Jaffe, J.S., P.J.S. Franks and A.W. Leising. "Simultaneous imaging of phytoplankton and zooplankton distributions". [Article] Oceanography. 11(1): 20, 1998.
Rafii, K. and Jaffe, J.S., "Adaptive ultrasonic measurement of blood vessel diameter and wall thickness: theory and experimental results", Ultrasonics, Ferroelectrics and Frequency Control, IEEE Transactions on , Volume: 45 Issue: 3 , May 1998, Page(s): 593 -603
Chandran, G. and Jaffe, J.S., "Signal set design with constrained amplitude spectrum and specified time-bandwidth product", Communications, IEEE Transactions on , Volume: 44 Issue: 6 , June 1996, Page(s): 725 -732
Jaffe JS. "Temporal sampling of backscattered sonar signals". [Article] ICES Journal of Marine Science. 53(2):359-361, 1996 Apr.
Mcgehee D. Jaffe JS. "Three-dimensional swimming behavior of individual zooplankters: observations using the acoustical imaging system FishTV". [Article] ICES Journal of Marine Science. 53(2):363-369, 1996 Apr.
Jaffe JS. Reuss E. Mcgehee D. Chandran G. "FTV: a sonar for tracking macrozooplankton in three dimensions". [Article] Deep-Sea Research Part I-Oceanographic Research Papers. 42(8):1495-1512, 1995 Aug.
Jaffe JS. "Monte Carlo modeling of underwater-image formation: validity of the linear and small-angle approximations". [Article] Applied Optics. 34(24):5413-5421, 1995 Aug 20.
Maffione RA, Jaffe JS. "The Average Cosine Due To An Isotropic Light-Source In The Ocean". [Article] Journal of Geophysical Research. 100 (C7): 13179-13192, 1995 July 15.
Palowitch, A. and Jaffe, J.S.. "Optical serial sectioned chlorophyll-a microstructure". [Article] Journal of Geophysical Research. 100(C7):13,267-13,278, 1995.
Mcgehee D, Jaffe JS. "Segmented Transducer Design Using an Optimum Mean-Square Quantizer Approach". [Article] Journal of the Acoustical Society of America. 97 (4): 2316-2325, 1995 April.
Palowitch, A. and Jaffe, J.S.. "Three-dimensional ocean chlorophyll distributions from underwater serial sectioned fluorescence images". [Article] Applied Optics. 33(14):3023-3033, 1994 May.
Mcgehee D, Jaffe JS. "Beamforming with Dense Random Arrays - The Development of Spatially Shaded Polyvinylidene Fluoride Acoustic Transducer". [Article] Journal of the Acoustical Society of America. 95 (1): 318-323, 1994 Jan.
Jaffe, J.S., "A Simplified Derivation of the Performance of Edge-Connected Crossed-Electrode Arrays for Two-Dimensional Projection and Beamforming", Signal Processing, IEEE Transactions on [see also Acoustics, Speech, and Signal Processing, IEEE Transactions on] , Volume: 41 Issue: 1 , January 1993, Page(s): 446
Sutton DW, Jaffe JS. "Acoustic Bedload Velocity Estimates Using a Broad-Band Pulse Pulse Time Correlation Technique". [Article] Journal of Acoustical Society of America. 92 (3): 1692-1698, 1992 Sep.
Cobra, D.T., Oppenheim, A.V., Jaffe, J.S., "Geometric distortions in side-scan sonar images: a procedure for their estimation and correction", Oceanic Engineering, IEEE Journal of , Volume: 17 Issue: 3 , July 1992, Page(s): 252 -268
Pretorius DH, Nelson TR, Jaffe JS. "3-Dimensional Sonographic Analysis Based on Color Flow Doppler and Gray Scale Image Data - A Preliminary-Report". [Article] Journal of Ultrasound in Medicine. 11 (5): 225-232, 1992 May.
Jaffe, J.S., "Limited angle reconstruction using stabilized algorithms", Medical Imaging, IEEE Transactions on , Volume: 9 Issue: 3 , Sept. 1990, Page(s): 338 -344
Olson, T. and Jaffe, J.S., "An explanation of the effects of Squashing in limited angle tomography", Medical Imaging, IEEE Transactions on , Volume: 9 Issue: 3 , Sept. 1990, Page(s): 242 -246
Jaffe, J.S., Cassereau, P.M., Glassbrenner, D.J., "Code design and performance characterization for code multiplexed imaging", Acoustics, Speech, and Signal Processing [see also IEEE Transactions on Signal Processing], IEEE Transactions on , Volume: 38 Issue: 8 , Aug. 1990, Page(s): 1321 -1329
Jaffe, J.S., "Computer modeling and the design of optimal underwater imaging systems", Oceanic Engineering, IEEE Journal of , Volume: 15 Issue: 2 , April 1990, Page(s): 101 -111
Jaffe JS, Cassereau PM. "Multibeam Imaging Using Spatially Variant Insonification". [Article] Journal of the Acoustical Society of America, 83 (4): 1458-1464, 1988 Apr.
Jaffe JS. "Difference Fourier-Analysis of Surface-Features of Bacteriorhodopsin Using Glucose-Embedded and Frozen-Hydrated Purple Membrane". [Article] Ultramicroscopy, 23 (1): 17-28, 1987 Apr.
Jaffe JS, Fricke R. "Constrained Reconstruction of Complex Waveforms". [Article] Journal of the Optical Society of America A-Optics Image Science and Vision. 4 (1): 216-220, 1987 Jan.
Jaffe JS, Glaeser RM, "Preparation Of Frozen-Hydrated Specimens For High-Resolution Electron-Microscopy". [Article] Ultramicroscopy. 13 (4): 373-377, 1984.
Jaffe, J.S., "Obtaining three-dimensional probability density functions from projected data," Proceedings of the SPIE International Symposium on optical Science and Technology, 4 pgs. (2001).
Jaffe, J. S. and A. De Robertis, "Zooplankton target localization and trakcing with a three dimensional sonar," Proceedings of the Fifth European Conference on Underwater Acoustics, ECUA 2000, Edited by P. Chevret and M.E. Zakharia, Lyon, France, 6 pgs (2000).
Jaffe, J.S., "Inferring 3-Dimensional animal motions from a set of 1-Dimensional multibeam returns," Proceedings of the 29th International Conference on Acoustic Imaging, Plenum Press, Hua Lee, editor, 8 pgs (2000).
Moore, K.D. and J.S. Jaffe, "Detailed obersvations of microbathymetry during the high frequency DRI," Proceedings Acoustical Society of America 140th Meeting, Newport Beach, CA. 3-5 December, 2000.
Jaffe, J. S. and K. D. Moore, "Joint Estimation of Underwater Imaging Parameters and Underwater Images," Ocean Optics XV, Monaco, October 2000 (7pgs.).
Moore, K.D. and J.S. Jaffe, "Smart sensor for underwater imaging in trubid waters using a laser line scan system," Ocean Optics XV, Monaco, October 2000 (10pgs).
Jaffe. J.S. and K.D. Moore, "Development and testing of a new underwater three dimensional imaging system: 3D Sea Scan," Proceedings of Mine Countermeasures Symposium, Postgraduate Naval School, Monterey, California. Feb. 2000.
Jaffe, J.S. and P.J.S. Franks, "Small scale optical structure measured via images of fluorescence emission," Proceedings of the SPIE Ocean Optics XIII, Halifax, Nova Scotia, Canada, 2963, 278-283 (1996).
Jaffe, J.S., G. Chandran and E. Reuss, "High frequency acoustic imaging in the ocean," Proceedings of the IEEE ICASSP ‘95. Detroit, Michican, 5, 2793-2796 (1995).
Palowitch, A.W. and J.S. Jaffe, "Three-dimensional reconstruction of ocean chlorophyll distributions from underwater serial sectioned flourescence images," Proceedings of the SPIE Ocean Optics XII, 2258, 56-66 (1994).
Jaffe, J.S. and A.W. Palowitch, “Determining underwater optical characteristics using serial section tomography,” Proceedings of the First International Conference on Image Processing, Austin, TX, pp. 173-176 (1994).
Jaffe, J.S. and D. McGehee, “FTV: A 3-dimensional sonar imaging system for mapping zooplankton trajectories,” Proceedings of the Acoustic Imaging and Remote Sensing, Int’l Conf. on Underwater Acoustics, Australian Acoustical Society, New South Wales, pp. 42-44 (1994).
McGehee, D. and J.S. Jaffe, “Design and testing of a three-dimensional acoustic imaging system,” Proceedings of the OCEANS ‘93. 18-21 October 1993. British, Columbia, III, 393-397 (1993).
Jaffe, J.S., “Robotic sensors: acoustic and optical options,” Proceedings of the Acoustic Signal Processing for Ocean Exploration. Jose M. F. Moura and Isabel M. G. Lourtie, eds. NATO ASI SERIES, Kluwer Academic Publishers, Portugal, pp. 581-587 (1993).
McGehee, D.E. and J.S. Jaffe, “A spatially shaded PVDF acoustic transducer,” Proceedings of the IEEE Ultrasonics Symposium, Tuscon, Arizona, pp. 589-592 (1992).
Jaffe, J.S., “Three-dimensional ultrasonic sensing of underwater animals,” Proceedings of the 1992 IEEE Ultrasonics Symposium, Tucson, Arizona, pp. 1147-1150 (1992).
Reuss, E. and J.S. Jaffe, “Real-time three-dimensional imaging sonar for in-situ tracking of zooplankton in the ocean,” Proceedings of the SPIE. 1733, 322-328 (1992).
Jaffe, J.S., “Validity and range of linear approximations in underwater imaging,” Proceedings of the Ocean Optics, XI, 1992 Int’l Symp. of Optical Applied Science & Engineering, SPIE, San Diego, CA. 1750, 338-396 (1992).
Palowitch, A.W. and J.S. Jaffe, “Experimental determination and modeling of volumetric optical properties,” Proceedings of the Ocean Optics X1, 1992 Int. Symp. on Optical Applied Science and Engineering, SPIE, San Diego. 1750, 104-113 (1992).
Palowitch, A.W. and J.S. Jaffe, “A computer model for predicting underwater images,” Proceedings of the SPIE Conf. on Underwater Imaging, Photography and Visibility, July 23, 1991. San Diego, CA. 1537, 128-139 (1991).
McGehee, D. and J.S. Jaffe, “A design approach for optimizing segmented transducers,” Proceedings of the IEEE Oceans ’91, 1550-1555 (1991).
Jaffe, J.S., “Sensors for underwater robotic vision: status and prospects,” Proceedings of the IEEE Intl Conf. on Robotics and Automation. 9-11 April 1991. CH2969-4/91, 2759-2766 (1991).
Feder, M. and J.S. Jaffe, “Limited angle reconstruction from noise data using clustering of the solution space,” Proceedings of the IEEE Int’l Conf. on Acoust. Speech & Sign. Proc. (1989).
Jaffe, J.S. and J.M. Richardson, “Code division multiple beam imaging,” Proceedings of the Oceans ‘89. 4, 1015-1020 (1989).
Nicholson, J.W. and J.S. Jaffe, “Side scan sonar acoustic variability,” Proceedings of the Oceans ‘88. 2, 338-343 (1988).
Jaffe, J.S. and C. Dunn, “A model-based comparison of underwater imaging systems,” Proceedings of the Ocean Optics IX. 925, 344-350 (1988).
Jaffe, J.S., D. Glassebrenner and P.M. Cassereau, “Incoherent coding techniques and performance characterization for multibeam sonar systems,” Proceedings of the IEEE Int’l Conf. Acoust. Speech & Sign. Proc. 88 CH2561-9(5), 2709-2712 (1988).
Jaffe, J.S. and P.M. Cassereau, “Multimode imaging for underwater robots,” Proceedings of the SPIE Int. Symp. on Pattern Recogn. and Acoust. Imaging. C329 (1987).
Cassereau, P.M. and J.S. Jaffe, “Frequency hopping patterns for simultaneous multiple-beam sonar imaging,” Proceedings of the IEEE Int’l Conf. Acoust. Speech & Sign. Proc. 87 CH2396-0(3), 1704-1707 (1987).
Jaffe, J.S., “The domains of underwater visibility,” Proceedings of the SPIE Ocean Optics VIII., 287-293 (1986).
Jaffe, J.S., “Bandwidth extrapolation through iterative deconvolution,” Proceedings of the SPIE Inverse Optics II, 73-79 (1985).
Jaffe, J.S. and L. Strong, “Application of a super-resolution algorithm to acoustic tomography multipath Data,” Proceedings of the IEEE Int’l Conf. Acoust. Speech & Sign. Processing. CH2118-8, 826-829 (1985).
Jaffe, J.S., S.E. Harris and R.A. Squires, “Computer model for predicting underwater images,” Proceedings of the ROV ‘85 . San Diego, CA., 12-15 (1985).
Jaffe, J.S., P. Cassereau and T. Sato, “Imaging apparatus,” U.S. Patent #5,855,951, (1988).
Jaffe, J.S., “A difference Fourier comparison between frozen hydrated and glucose embedded purple membrane,” Ph.D. Thesis. University of California, Berkely. UCB Li 125 (1982).