Blogs

Best Student Paper Runner-Up Award

The proceedings paper "Measurement System for Obtaining Marine Animal Reflectance Functions" by Justin M. Haag, Alison M. Sweeney, and Jules S. Jaffe was recently selected for the Best Student Paper Runner-Up Award at the Ocean Optics XXI Conference in Glasgow, Scotland. Please also check out the associated poster which provides a summary of the paper as well as a preview of results from our cruise off the Hawaiian islands on the R/V Kilo Moana this past June. Stay tuned as there is much more to come!

10W Red LED into a collimated beam

A few images of a roughly collimated LED light source I have been working on for our zooplankton imaging system (MAZOOPS).Red LED Light with flashRed LED Light with flash                  Red LED Light without flash long exposureRed LED Light without flash long exposure

Jules through the fish's eye

Got in one very cool fisheye lens today with a 185 degree field of view in air. Jules came by the lab and we snapped a photo from the fish's eye:Jules through the fish's eye: 2.7 mm fisheye lens image of Jules and Paul in the Lab.Jules through the fish's eye: 2.7 mm fisheye lens image of Jules and Paul in the Lab.

Two articles submitted to IEEE Journal of Oceanic Engineering This Week

After a long summer of writing we submitted two papers representing over two years of work to IEEE Journal of Oceanic Engineering. The first article [1] presents a comprehensive analysis of several multiview fusion algorithms for classifying inidividual fish from broadband acoustic scatter. The second article [2] presents several image processing algorithms for correction motion-blur and nonuniform illumination in in situ images of light scattering from open ocean particles. References
  1. Roberts PLD, Jaffe JS, Trivedi MM.  2011.  Multiview, Broadband Acoustic Classification of Marine Fish: A Machine Learning Framework and Comparative Analysis. IEEE Journal of Oceanic Engineering. 36(1):90-104.
  2. Roberts PLD, Steinbuck JV, Jaffe JS, Horner-Devine AR, Franks PJS, Simonet F.  2011.  Estimation of In Situ, Three-Dimensional Particle Distributions from a Stereo Laser Imaging Profiler. IEEE Journal of Oceanic Engineering. 36(4):586-601.

Compressive Sensing

I'm starting work today on a paper related to reconstructing a two-dimensional image of a fish from many observations of broadband scattering. Thus far, we have employed conventional dense reconstruction methods such as the inverse Radon transform and assumed a known geometry. This has lead to quite interesting results, but in some cases suffers from errors in geometry estimates, or biases due to low resolution. In the next phase, I plan to apply some of the sparse reconstruction methods that fall under the category of Compressive Sensing. To learn more about compressive sensing, there is a very comprehensive resource available from Rice University: Compressive Sensing Resources.For this application, the idea is to exploit the fact that the true image of the fish can be accurately expressed by only a small number of coefficients in a suitable basis. Since we don't know the true image of the fish, we don't know the correct coefficients a priori and that is where sparse learning comes in. In the learning phase, we search an over-complete set of solutions under constraints that enforce sparsity. For appropriate choices of sparsity constraints, these methods have been shown to find the correct set of sparse coefficients. As an additional task, I also hope to use to sparse learning framework to deal with the fact that we don't really know the geometry in this case.Here is an example of the results that we have obtained thus far:Inverse Radon Transform of a Damselfish: Computed using the echo envelope recorded on more than 360 views of the fish. Orientations were estimated using video data and sorted before running the IRT. The final image was thresholded manually.Inverse Radon Transform of a Damselfish: Computed using the echo envelope recorded on more than 360 views of the fish. Orientations were estimated using video data and sorted before running the IRT. The final image was thresholded manually.         

WACV paper on multi* fusion accepted for poster presentation

After returning from our first cruise with the MAZOOPS system, we heard the great news that our paper titled: "A Multiview, Multimodal Fusion Framework for Classifying Small Marine Animals with an Opto-Acoustic Imaging System" was accepted for a poster presentation at the WACV 2009 conference in December.

MAZOOPS coming together for Sept. Cruise

After more than a year of hard work, the Multiple Angle ZOOPlankton Sonar (MAZOOPS) is nearly ready for deployment at sea in September. On Friday we started the final assembly and will begin tank tests on Monday.

WACV paper on multi* fusion submitted last week

Last week we submitted a paper to the 2009 Worshop on Applications of Computer Vision (WACV).  The paper presents some recent results on fusing multiple views and multiple modalities together to improve classification performance. The application was to zooplankton classification which has been a focus of my research for the last four years.

Revisting Connecting to UCSD's VPN server on a x86_64 SMP Linux machine

Recently I found I was unable to connect to the UCSD VPN using my trusty old vpnc client and split routing. Strangely allthru routing worked just fine. Searching through the UCSD VPN page I noticed that a new versino of the cicso client (AnyConnect) was availavble for linux. The new client automated the whole process and the install was trivial.

Connecting to UCSDs VPN server on a x86_64 SMP Linux machine

Tonight I came across a nice alternative to the Cisco VPN client that is distributed by UCSD for connecting to the VPN here. According to the UCSD website, their version of the VPN client does not support SMP kernels, and has beta support for x86_64.
Syndicate content