Publications
Found 77 results
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2013. Measurement system for marine animal reflectance functions. Optics Express. 21(3):3603-3616. Download: oe-21-3-3603.pdf (1.87 MB)
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2012. Measurement of Marine Animal Reflectance Functions. Ocean Optics XXI. Download: jmhaag_poster_OO.pdf (12.68 MB)
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2012. Measurement System for Obtaining Marine Animal Reflectance Functions. Ocean Optics XXI. Download: jmhaag_proceedings_OO.pdf (11.43 MB)
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2011. Estimation of In Situ, Three-Dimensional Particle Distributions from a Stereo Laser Imaging Profiler. IEEE Journal of Oceanic Engineering. 36(4):586-601. Download: Roberts2011.pdf (2.14 MB)
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2011. Applying diffraction theory to measure acoustically the in-situ orientation of marine animals. Acoustics Today. 7:36-37. Download: Acoustics_Today_2011.pdf (12.26 MB)
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2011. Estimating fish orientation from broadband, limited-angle, multi-view, acoustic reflections. Journal of the Acoustical Society of America. :670-680. Download: JAS000670.pdf (3.23 MB)
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2011. Multiview, Broadband Acoustic Classification of Marine Fish: A Machine Learning Framework and Comparative Analysis. IEEE Journal of Oceanic Engineering. 36(1):90-104. Download: 05732764.pdf (2.44 MB)
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2011. Physical and biological controls of vertical gradients in phytoplankton. Limnology and Oceanography. Download: Prairie-Franks-Jaffe-L&OFluids.pdf (546.62 KB)
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2011. Acoustic reflections on marine populations . Physics Today. 64(9):76.
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2010. Cryptic peaks: Invisible vertical structure in fluorescent particles revealed using a planar laser imaginer fluorometer. Limnology and Oceanography. 55(5) Download: Prairie-Franks-Jaffe-L&O2010.pdf (3.48 MB)
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2010. An autonomous open-ocean stereoscopic PIV profiler. Journal of Atmospheric and Oceanic Technology. 27 Download: Steinbuck2010.pdf (1.7 MB)
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2010. Enhanced extended range underwater imaging via structured illumination. Optics Express. 18(12) Download: JaffeStructIll2010.pdf (1013.51 KB)
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2010. Sizing homogeneous spherical particles from intensity-only angular scatter. Journal of the Optical Society of America. Download: Wei_Angular_Sizing.pdf (472.91 KB)
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2009. Multi-view, broadband, acoustic classification of marine animals. Electrical and Computer Engineering. Ph.D.:185. Download: proberts.pdf (4.27 MB)
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2009. Multi-view sizing and classification of individual fish. 30th Acoustical Imaging Symposium. :241-249.
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2009. Copepod feeding quantified by planar laser imaging of gut fluorescence. Limnology and Oceanography: Methods. 7:33-41. Download: 0033.pdf (2.06 MB)
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2009. A Multiview, Multimodal Fusion Framework for Classifying Small Marine Animals with an Opto-Acoustic Imaging System. IEEE Workshop on Applications of Computer Vision. Download: 238.pdf (1.08 MB)
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2008. Classification of live, untethered zooplankton from observations of multiple-angle scatter. Journal of the Acoustical Society of America. 124(2):796-802. Download: macz_jasa_paper2.pdf (502.42 KB)
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2008. Application of multiple-angle acoustic scatter to remote fish classification. Acoustics 08. Download: 2pAOa4-Acoustics08.pdf (1.5 MB)
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2008. Remote classification of fish species using multi-view acoustic scatter. SEAFACTS. Download: SeaFacts08Abstract.pdf (42.57 KB)
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2008. Microscale variability in the distributions of large fluorescent particles observed in situ with a planar laser imaging fluorometer. Journal of Marine Systems. 69:254-270. Download: Franks_Jaffe_2008.pdf (1.85 MB)
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2007. Classifying pelagic animals with multi-view scattered sound. American Fisheries Society. Download: p1256_ASF07-draft-7.pdf (1.41 MB)
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2007. A new multiple angle scattering apparatus for fish and zooplankton studies. 153nd Meeting of the Acoustical Society of America. Download: maczasajune2007.pdf (889.92 KB)
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2007. Measurement of the acoustic reflectivity of sirenia (Florida manatees) at 171 kHz. Journal of the Acoustical Society of America. 121:158-165. Download: Measurement of the acoustic reflectivity of sirenia (Florida manatees) at 171 kHz.pdf (310.39 KB)
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2007. Multiple angle acoustic classification of zooplankton. Journal of the Acoustical Society of America . 121:2060-2070. Download: macz_jasa2.pdf (369.55 KB)
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2007. A tomographic approach to inverse mie particle characterization from scattered light. Optics Express. 15:12217–12229. Download: Jaffe_Mierecon_Optexp.pdf (280.72 KB)
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2006. Multiple-angle acoustic scattering and classification of zooplankton. 152nd Meeting of the Acoustical Society of America (Best Student Paper Award). Download: asa_nov_2006.pdf (22.81 KB)
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2006. Development of a Pelagic Multi-spectral, 3-dimensional, Particle Image Velocimetry System: FIDO PHI PI. Ocean Optics XVIII. Download: OO2006.pdf (1.79 MB)
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2006. Angular resolved light scattering for discriminating among marine picoplankton: modeling and experimental measurements. Optics Express. 14:12473-12484. Download: Angular resolved light scattering for discriminating among marine picoplankton modeling and experimental measurements.pdf (2.09 MB)
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2006. Using multiple-angle scattered sound to size fish swimbladders. ICES Journal of Marine Science. 65:1092-. Download: Jaffe_ICES_multiangle2006.pdf (306.73 KB)
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2005. Using diffraction tomography to estimate marine animal size. Acoustical Imaging Symposium 28.
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2005. Design and preliminary tests of a family of adaptive waveforms to measure blood vessel diameter and wall thickness. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control: Special Issue on Coded Waveforms. 52:250-260. Download: Design_of_adapative_waveforms.pdf (1.25 MB)
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2005. Performance bounds on synchronous laser line scan systems. Optics Express. 13:738-748. Abstract
Download: Performance_bounds_on_laser_line_scan_systems.pdf (228.41 KB)
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2005. Diel pattern with abrupt crepuscular changes of zooplankton over a coral reef. Limnology And Oceanography. 50:930–944. Download: Ruthy_L&O.pdf (407.04 KB)
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2005. Sensing Plankton: Acoustics and Optical Imaging. European Workshop on Harmful Algal Blooms. Download: Jaffe_HABmeeting.pdf (650.13 KB)
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2005. Swimming Against the Flow: A Mechanism of Zooplankton Aggregation. Science. 308:860-862. Abstract
Download: swimming_against_the_flow.pdf (196.57 KB)
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2005. Three-dimensional probability density functions via tomographic inversion. Siam Journal On Applied Mathematics. 65:1506–1525. Abstract
Download: SIAM_Jaffe.pdf (224.28 KB)
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2004. Identifying stable frequencies for performing animal abundance estimation with a multifrequency system. Acoustical Society of America. Download: asa_nov_2004.pdf (452.71 KB)
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2004. Experimental verification of an interpolation algorithm for improved estimates of animal position. Journal of the Acoustical Socieity of America. 116:254-261. Abstract
Download: Verification_of_an_algorithm_for_animal_position.pdf (259.9 KB)
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2003. Changes in the fluorescence of the Caribbean coral Montastraea faveolata during heat-induced bleaching. Limnology and Oceanography. 48:412-425. Abstract
Download: Heat-induced bleaching.pdf (1.6 MB)
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2003. Acoustic observations of the swimming behavior of the euphausiid Euphausia pacifica Hansen. ICES Journal of Marine Science. 60:885-898. Abstract
Download: Acoustic_observations_of_Euphausia_pacifica_Hansen.pdf (495.44 KB)
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2002. Time-evolution of high-resolution topographic measurements of the sea floor using a 3-D laser line scan mapping system. IEEE Journal of Oceanic Engineering. 27:525-545. Download: TimeEvolutionOfTopography.pdf (605.97 KB)
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2002. Thin laser light sheet microscope for microbial oceanography. Optics Express. 10:145-154. Abstract
Download: tlsm_osa_2002.pdf (252.24 KB)
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2002. The effect of elevated levels of phaeophytin in natural water on variable fluorescence measured from phytoplankton. Journal of Plankton Research. 24:1221-1229. Abstract
Download: Phaeophytin effect on fluorescence measured from phytoplankton.pdf (238.76 KB)
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2001. Overview of SAX99: environmental considerations. IEEE Journal of Oceanic Engineering. 26:26-53. Download: SAX99.pdf (989.96 KB)
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2001. Microscale distributions of phytoplankton: initial results from a two-dimensional imaging fluorometer, OSST. Marine Ecology Progress Series. 220:59–72. Download: Microscale distributions of phytoplankton.pdf (820.97 KB)
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2001. Underwater optical imaging: Status and prospects. Oceanography. 14(3) Download: 14.3_jaffe_et_al.pdf (4.53 MB)
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2000. Development of a New Underwater Bathymetric Laser Imaging System: L-Bath. Journal of Atmospheric and Oceanic Technology. 17:1106–1117. Abstract
Download: bathymetric laser imaging system L-bath.pdf (282.37 KB)
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2000. Size-Dependent Visual Predation Risk and the Timing of Vertical Migration in Zooplankton. Limnology and Oceanography. 45:1838–1844. Abstract
Download: Size-dependent visual predation.pdf (164.07 KB)
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1999. Sonar estimates of daytime activity levels of Euphausia pacifica in Saanich Inlet. Canadian Journal of Fisheries and Aquatic Sciences. 56:2000-2010. Abstract
